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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctcattattcacaagacattcctaatttggttgccttgtgttaagaaaaattgcagctgattaattgtcatccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAAATTGATGCTTTGGTTTCAGGAATAGGAACTGGGGGGTCAATAGCAGGAG

Basic information

species Glycine max
transcript GLYMA20G37280.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340199|gb|GR858324.1|GR858324
EST:     CG-CTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|254338389|gb|GR845639.1|GR845639
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|151409405|gb|EV279213.1|EV279213
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|58019268|gb|CX706010.1|CX706010
EST:     CGCNTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGNCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|58019608|gb|CX706350.1|CX706350
EST:     CGCTTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCNTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|58024841|gb|CX711582.1|CX711582
EST:     CGCTTGATAGTTTTATGCTCAACCAATTTGAAAATCNTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|254348058|gb|GR854307.1|GR854307
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|254338246|gb|GR849771.1|GR849771
EST:     TAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: TAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|308098448|gb|HO760189.1|HO760189
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCCAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|17400150|gb|BM176932.1|BM176932
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
EST: gi|9259980|gb|BE348127.1|BE348127
EST:     CGCCTGATAGTTGTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAG
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAG
EST: gi|254340198|gb|GR858323.1|GR858323
EST:     CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAAT                         ATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA
genomic: CGCCTGATAGTTTTATGCTCAACCAATTTGAAAATCCTGCAAATCCAAATgtattctcat ... atccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggttgccttgtgttaagaaaaattgcagctgattaattgtcatccttgtagATTCATTACGAGACAACGGGCCCTGAGATTTGGAGGGACTCGGGAGAGAAAATTGATGCTTTGGTTTCAGGAATAGGAACTGGGGGGTCAATAGCAGGAG
                                           tcatcctt  CT-rich tract
              tgttaagaaaaatt  TA-rich tract