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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata...

Basic information

species Glycine max
transcript GLYMA20G37190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 5'ss of exon 2
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgt--gagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata-
 || || || || || || ||||||||||| || || ||  | ||||| ||     | ||    ||||||||||||||||| ||||||||||| ||||||||  | |    |    |||   ||         || |  | ||  ||    ||  |    ||||   | |  |  |||  ||         ||  | ||    
CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcctctcttgtctcgttgatctcgccctgctcttgatagtttagtttaatcgtgatgc---tatgctgaaatctgaacaatctagtactactagagt

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 5'ss of exon 2
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgag------ttatttaaatctttctgt-gtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata
 || || || || || || ||||||||||| || || ||  | ||||| ||     | ||    ||||||||||||||||| ||||||||||| ||||||||  |      |   | | | |||| ||   ||| |    ||| | | |||     |  | ||         |  || ||      |  |   | || |        
CCGCACCCACTTCGGAGGCGGCAAGTCCACCGGATTCGGCCTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcacgcatcgctcagaactttgtgccatcactctgcattctgaatttgggattgagctagcggaatggtggttgttcgcctcagtgctcggttgtg-------

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G091383_T01 (Zea mays), 5'ss of exon 2
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagt-tatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata-
 || || || || || || |||||||| || || || ||| | ||||| ||    || ||    |||||||||| |||||| ||||||||||||||||||||  |  | | |   || | | || |   | |   |  |||||     | |  ||    |||     | |  |   |   |   ||||       | |    
CCGCACCCACTTCGGAGGCGGCAAGTCTACCGGATTCGGTCTCATCTACGACAACGTCGACTCAGCCAAGAAGTTCGAGCCCAAGTACAGGCTTATCAGGgtatgcgtctcttgctcctcccgtttttctcac--tcgtaattggattcataggtctccatgttgaatatactgcctggtatacgctgaaagctcaaagctt

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgat-tataatttttcccctttgt-----taaaatgccttttttttttaattagacgggctgtttataaataata---------------------------------------------------------------------------------------------
  |||| || ||||| ||||| || ||  | ||||||||||||||||||||| | |||||||  || |||||||  || || || ||||| ||||||||||| | |  |||      |  ||| || ||| | || |||   |  || | ||        | ||||   |  | ||  | ||||  | |  ||| |  |||| |||                                                                                             
CAGAACCCACTTTGGAGGTGGTAAATCATCCGGGTTTGGTTTGATCTATGATACTGTTGAGAGCGCTAAGAAGTTTGAACCCAAATACAGACTTATCAGGgtaaatgctttttccactcttgtttccattgttatatattgctactcacattgacccgtcttaaatcattactcttgctcatta--ctgtttgtctgaaaattataagctatgtgataagtttcggactttatatcgtattgcacttggtgttctctgcatctttatacttaaacatgctttgtctatgtggttggcag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgt--gtcaattatgattataatttttcccctttg--ttaaaatgccttt--tttttttaattagacgggctgtttat-aaataata--------------------------------------------
  ||||||| ||||| ||||| || ||  |||| | |||||||||||||||| | || ||||| || |||||||  |||||||||||||| ||||||||||| | || | |  |  | | ||   || || ||  | | |   || |    |||    ||   | |  ||  |  ||| | ||  || |  |    || ||| |||                                             
CAGAACTCACTTTGGAGGTGGTAAATCTTCTGGATATGGTTTGATCTATGATACTGTCGAGAACGCTAAGAAGTTTGAGCCTAAGTACAGACTTATCAGGgtaatttctctttacttgtttgatagttaagtaaaacttttggttctagtttttagtctagcttactcttggtgctttgattttcactgctttgcgatgaaacaatggtgttgcaatctcatactgaaatgattgttgatgtgattgacag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattat--------aatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata
 || ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||| ||||||| | | | ||| ||    | ||        ||  | | |  | | | |   |      ||||| || ||||| |  || | | |        
CCGGACTCACTTTGGAGGTGGGAAGTCTACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCGAAGAAGTACGAGCCTAAGTACAGGCTCATCAGGgtaaattatataaatctctttttctcatttgatttcatcaagcatcaagctattctgtatatgagggttgtgcgtttttgtatttagatgatctttattt--------

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S450_9V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttct------gtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaat---tagacgggctgtttata--aataata---------------------------------
  | || || ||||| ||||||||||||||||| || ||| | ||||| ||||| |||||   ||||||||| |||||||| ||||||||  | ||||||||||||| | |   ||  ||       |||   ||  ||   |  | |       |  |       | ||||| | || |||   || |||    | || |   | |  ||                                 
CAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGATTCGGTCTCATCTACGATTCTGTTGACTCTGCCAAGAAATACGAGCCGAAGTACAGATTGATCAGGgtgagttttctgtctccatcatgtggagtgcttatggtgtcgaggagtgaaaatttgagcggtctcggcttttctcttgaatggctacacgcttaggttgtctcagtgttaagtattgaaattttgggtgttggggatgtgcag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S204_49V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatcttt-ctgtgtcaattatgattataatttttcccctttgttaaaatgc-cttttttttttaattagacgggctgtttataaata-ata----------------
  | || || ||||| ||||||||||||||||| |||||  | |||||||| || || ||   |||||| || ||||||||||||||||||||||| |||||  ||  ||  |  | || |||   |  || |  |||      |     ||  | | |  |  ||  |  |   ||||    | ||  |  || | |  ||                 
CAGGACCCAATTTGGAGGTGGCAAGTCCACTGGATTTGGCCTCATCTATGACTCTGTCGACTCTGCCAAAAAATACGAGCCTAAGTACAGGCTTATTAGGgtatgtgtttccaccccttactgatgcccttgttgttacgtccctcatatttcataatacagtactaatggtcgcaattc--tgagcattccatgacttcatgcatttgcgaattgtag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S13_236V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgag--ttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata-------------------------------------------------------
  |||| ||||| || ||||||||||||||||| |||||| | ||||| || ||  ||||   ||| ||||| |||||||| ||||||||||| || ||||||||  | ||  | | ||   ||  |||  |  |  | | |  ||        || ||      || |||||||  | | |     || | ||   |                                                           
CAGAACGCATTTCGGAGGTGGCAAGTCCACTGGATTTGGTCTCATCTACGACTCCATTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtgagattcatcgagacctgattggttca--tccggctctgaggttcttgaaaggtcaaggcatgttatttttttgttgaaataatttgctgattggtttggtgtgttcatttgtcaagatctttagtattgaggatagtttaatggttatttgcag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S37_112V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttat-ttaaatctttctgtgtca-attatgattataatttttcccctttg--ttaaaatgcctttttt--ttttaattagacgggctgtttataaataata-------------------------------------------
  | || || ||||| |||||||||||||||||||| ||| | ||||| || || |||||   ||| ||||| |||||||| ||||||||||| || |||||  ||| | |     |     ||||||    ||   |   | |  |   || |   |||   | ||||| |   ||| | |  | |   |        |||  |                                            
CAGGACCCAATTTGGAGGTGGCAAGTCCACTGGGTTCGGTCTTATCTACGACTCTGTTGACTCTGCTAAGAAATACGAGCCCAAGTACAGGCTCATTAGGgtatgttctgtctcggcgcagggtgtcacgggatttctgcgagtgataatctatagcttatgctacctttctcaatttcattctggcaatcgaaaacctaattctgcatccactgtaattttaataactttcaaattgggaacatgtag

upper sequence: GLYMA20G37190.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S450_3V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttat---ttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgg-gctgtttataa-ataata-----------------------------------------------------------------------
| | || || ||||| ||||||||||||||||| |||||| | ||||| ||||| |||||    || ||||| |||||||| ||||| ||  | ||||||||||||  |   |       | |||     ||   ||  | | | || |   |  || |    || || ||  ||  |  ||  |  | |||||  |   ||                                                                          
TAGGACCCAGTTTGGAGGTGGCAAGTCCACTGGCTTTGGTCTCATCTACGATTCCGTTGACTCCGCAAAGAAATACGAGCCCAAGTATAGATTGATCAGGgtgagtgctgggtcgccatgtcctgaacggatcgggag-acagtgttgcgtatgagtcacggggcgttgttggttcgagaagtggttgttgttttcagtgtagctactcgaatcgttcgttgtgttaggttgtcttggcaattggtatcgacgtttaaagtgagtggaatgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187088|gb|HO034237.1|HO034237
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAGGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|6567197|gb|AW234810.1|AW234810
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|17964649|gb|BM271381.1|BM271381
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|193611659|gb|FK560864.1|FK560864
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTA
EST: gi|193647660|gb|FK593573.1|FK593573
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATACAAAGGAAGCAAATGAA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAAT-CAA-GGAAGCAAATGAA
EST: gi|17023150|gb|BM094184.1|BM094184
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298184841|gb|HO030054.1|HO030054
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|193325398|gb|FK291830.1|FK291830
EST:     TTCAGTTGAGAATGCCAAGTAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATAGGACTTGATACTAA
genomic: TTCAGTTGAGAATGCCAAG-AAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAAT-GGACTTGATACTAA
EST: gi|192323207|gb|FK016338.1|FK016338
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|4396941|gb|AI495938.1|AI495938
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAG
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAG
EST: gi|13790809|gb|BG653400.1|BG653400
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|208106456|gb|GD905573.1|GD905573
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATA
EST: gi|298167320|gb|HO010759.1|HO010759
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|24136103|gb|BU926613.1|BU926613
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|5126552|gb|AI748288.1|AI748288
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATA
EST: gi|18040612|gb|BM308906.1|BM308906
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCCAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|21602519|gb|BQ612850.1|BQ612850
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|9899853|gb|BE608821.1|BE608821
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAGAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
EST: gi|298192673|gb|HO033107.1|HO033107
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGT
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGT
EST: gi|6913093|gb|AW394623.1|AW394623
EST:     ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGG                         AATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA
genomic: ATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatt ... tttattgcagAATGGACTTGATACTAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTACGAGCCTAAGTACAGGCTTATCAGGgtgagttatttaaatctttctgtgtcaattatgattataatttttcccctttgttaaaatgccttttttttttaattagacgggctgtttataaataata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT