Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttcttttatgattttgtgtgatgttggaaactgtgaagctgctatttttttttttacttaagcagatgaatgctacgttttaatatgttatttgcatgaagattgtgttacctttttaatttgttgtgttttgtgtgaag

Basic information

species Glycine max
transcript GLYMA20G37190.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187088|gb|HO034237.1|HO034237
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|6567197|gb|AW234810.1|AW234810
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|17964649|gb|BM271381.1|BM271381
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193611659|gb|FK560864.1|FK560864
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193647660|gb|FK593573.1|FK593573
EST:     TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|17023150|gb|BM094184.1|BM094184
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|298184841|gb|HO030054.1|HO030054
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193325398|gb|FK291830.1|FK291830
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|192323207|gb|FK016338.1|FK016338
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACGCTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|6951361|gb|AW423429.1|AW423429
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|4396941|gb|AI495938.1|AI495938
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|13790809|gb|BG653400.1|BG653400
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|208106456|gb|GD905573.1|GD905573
EST:     GTTGATGTCCTTCATCCAGGGAGGGCTAATTGTTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAA
genomic: GTTGATGTCCTTCATCCAGGGAGGGCTAA-TG-TTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAA
EST: gi|298183483|gb|HO028696.1|HO028696
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|298167320|gb|HO010759.1|HO010759
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|24136103|gb|BU926613.1|BU926613
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|192322799|gb|FK014490.1|FK014490
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193461417|gb|FK428872.1|FK428872
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|208050350|gb|GD845517.1|GD845517
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|5126552|gb|AI748288.1|AI748288
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|18040612|gb|BM308906.1|BM308906
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|21602519|gb|BQ612850.1|BQ612850
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193712915|gb|FK649238.1|FK649238
EST:     ATCGTTGATGTCCTTNATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAA-TTGGGCAGAATGTATGACGT
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGT
EST: gi|9899853|gb|BE608821.1|BE608821
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|298192673|gb|HO033107.1|HO033107
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|193656507|gb|FK604995.1|FK604995
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
EST: gi|6913093|gb|AW394623.1|AW394623
EST:     ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC
genomic: ATCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtattttttc ... ttgtgtgaagGCTGAACTGAAGGAGAAATTGGGCAGAATGTATGACGTGAAAGACACTAAC