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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctgccagagtagagcttatttggggtttttgtctttcatctaactgtgtcctcaagacttattctttttattctttttttaattgtcatccttaatttgatctcatctgtattaacagTTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGATTAGGGATGGCCTTCTTGGCCATTGCTACTCCATCTTTGCCTTTTCTTTT

Basic information

species Glycine max
transcript GLYMA20G37000.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667419|gb|AW278870.1|AW278870
EST:     ACCTTCCTCATTGTCTCATCATGAATATTCTGATGATGATTCTGGAAAAG                         TTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGAT
genomic: ACCTTCCTCATTGTCTCATCATGAATATTCTGATGATGATTCTGGAAAAGgtatgttctg ... gtattaacagTTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGAT
EST: gi|21888725|gb|BQ741938.1|BQ741938
EST:     ACCTTCCTCATTGTCTCATCATGAATATTCTGATGATGATTCTGGAAAAG                         TTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGAT
genomic: ACCTTCCTCATTGTCTCATCATGAATATTCTGATGATGATTCTGGAAAAGgtatgttctg ... gtattaacagTTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttattctttttttaattgtcatccttaatttgatctcatctgtattaacagTTCATCAGCGTCAGATGTCATCATGTAATGCTGCTACGTGGTTCTATGGATTAGGGATGGCCTTCTTGGCCATTGCTACTCCATCTTTGCCTTTTCTTTT
     tattctttttttaatt  TA-rich tract