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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtgcattattattctattttagcaatatctcaaaaatttgtcttccagtaattttttaaaaggccatcttgcttgagtagtcatgtgactaagttgaagtttgtgataaatgttaaataatttgcttttaccttgtttgtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT

Basic information

species Glycine max
transcript GLYMA20G37000.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37000.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0036g00430.t01 (Vitis vinifera), 3'ss of exon 5
gtatttgtgcattattattctattttagcaatatctcaaaaatttgtcttccagtaattttttaaaaggccatcttgcttga-gtagtcatgtgactaagttgaagtttgtgataaatgttaaataatttgcttttaccttgttt----gtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT
                                                        |  || |         | ||| || | | ||| |  |||  |  | |    |  |  | |||| | |||  | || | | ||  |||||     |||| |||||||| ||||||||||| |||| ||| ||||||||||||| |||||||  ||||||||| ||||    ||| || || |||||||| ||| | |||||  
-------------------------------------------------------gagcttatggggaaatttattgtttcatgcagtga-atgagcatttagtcactgat--ttaatgctcaattctatgatgtaacactgttttctaatgcttcagAATGTCAGGGAACAGCTTGAGGGATCTCTTCCTGGAACTGAAGGGGGCAGAAATCCTAATGATACAATTCTAGTCAAATTTCTTTTCCTGATTCCATTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaagtttgtgataaatgttaaataatttgcttttaccttgtttgtgctgcagAATGTAAGGGAACAGCTGGAGGAATCCCTTCCTGGAACTGGAGGGGGCCAAAATCCTAAAGATAATTATCTTGTGAAGTTTCTTTTTCTGCTACCATTTT
                                cttttaccttgttt  CT-rich tract
           tgataaatgttaaata  TA-rich tract