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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcaccatactcacttatcctatgttcaaagaaaattattatcttatcttacataaaattgtttatttctaattcacag

Basic information

species Glycine max
transcript GLYMA20G36790.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36790.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os12g40890.1 (Oryza sativa), 5'ss of exon 4
GATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagt-caccatactcacttatcctatgttcaaagaaaattatt---atcttatcttacataaaattgtttatttctaattcacag--------------------------------------------------------
|||||| ||||||||||||||||| ||| | ||||||||||| || || || || || |||||| ||| ||    |     |  | |||  | ||||  |  |  ||    | | || |||  |      ||||| ||  | ||                                                             
GATGTTTGTTGAATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcatatcaagttttatttctacatacaaattagctcctttgggtttgattttaagttggg--gtttaatttaagttggatatcagttactgacagaacagtgaaatataatatattttttgttttgaattgtttcag

upper sequence: GLYMA20G36790.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138268_T01 (Zea mays), 5'ss of exon 4
GATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcaccatactcacttatc-------ctatgttcaaagaaaattattatcttatcttacataaaattgtttatttctaattcacag----------------------
||||||||| |||||||||||||| ||||| || |||||||| || || || || || || ||| |||   ||||     ||||        |||   ||||  | ||     |  || |     |  ||   |    ||| |        |                      
GATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccag

upper sequence: GLYMA20G36790.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G138268_T02 (Zea mays), 5'ss of exon 3
--------------------------------------GATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcaccatactcacttatc-------ctatgttcaaagaaaattattatcttatcttacataaaattgtttatttctaattcacag----------------------
                                      ||||||||| |||||||||||||| ||||| || |||||||| || || || || || || ||| |||   ||||     ||||        |||   ||||  | ||     |  || |     |  ||   |    ||| |        |                      
TAATCGGAAAATAATAATAATTTCCATTTCATTTTCAGGATGTTCGTCGAATCATGCAAGCGCCTTCGGATCATGAAAGGATCAGAAGCCATTGGCCTGGgtgagttgacatatatgattattattattactaatctcaacaacaaaagagactttctagggtagtaagcagcccgtttgtttcatctggtctctatctctgaattttccag

upper sequence: GLYMA20G36790.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 5'ss of exon 4
GATGTTCGTTGAATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcac-catactcact-tatcctatgttca--------------aagaaaattattatcttatcttacataaaattgtttattt--ctaattcacag-----------
||||||||| ||||| ||||||||  | |||||||||||||| |||||||| ||||| ||||||||||||   |||||  ||  | |  ||| |||              || |   | |  |  ||  || || |||  |  | |||||   | ||| |              
GATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTGgttagtcatatatacttgctgcaactcatgatcattatggttatgttcaaaattttcaccacttttgctgacttaatctcttgtatttgcttgattaatcaatggcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21594765|gb|BQ610259.1|BQ610259
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|254339868|gb|GR857993.1|GR857993
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|254339867|gb|GR857992.1|GR857992
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|21600987|gb|BQ611327.1|BQ611327
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAA
EST: gi|26057410|gb|CA800324.1|CA800324
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGC
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGC
EST: gi|151396677|gb|EV266550.1|EV266550
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAA-GTGCA-GA-CAGA-GCTGAAGA-GTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|151398070|gb|EV267948.1|EV267948
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|192317984|gb|FK009464.1|FK009464
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|21602083|gb|BQ612414.1|BQ612414
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|51335090|gb|CO978956.1|CO978956
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|58024615|gb|CX711356.1|CX711356
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|192317983|gb|FK009463.1|FK009463
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|42722983|gb|CK768882.1|CK768882
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGATAAGTGCAAGAACAGAAGCTGATGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|208178460|gb|GD977797.1|GD977797
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|192297650|gb|FG992758.1|FG992758
EST:     ATCATGCAAGCGTTTTCGCATAATGAAAGGTTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|214008573|gb|DB986750.1|DB986750
EST:     ATCATGCAAGATTCAACGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|57576038|gb|CX549009.1|CX549009
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAAGAAGTGATTTCA
EST: gi|26058652|gb|CA801566.1|CA801566
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAA
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGAA
EST: gi|10236738|gb|BE805626.1|BE805626
EST:     ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTG                         CGCCAAGAGCCGTGGAAAAGTGGCAA-AACAGAAGC
genomic: ATCATGCAAGCGTCTTCGCATAATGAAAGGCTCCGAGGCAATCGGTCTTGgttagtcacc ... taattcacagCGCCAAGAGCCGTGGAAAAGTG-CAAGAACAGAAGC