1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcgatgataacgatatgctaattaaattaaaattattagttattagtaggagggataaagaggatgaattattgatggttatcaaagttgaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAGCAATGAAGAAGAGGCAGAGAAGAGCACGAAGAATGCT
species | Glycine max |
transcript | GLYMA20G36790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|213589912|gb|DB969663.1|DB969663
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|23729051|gb|BU762605.1|BU762605
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|4405662|gb|AI507811.1|AI507811
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|254339867|gb|GR857992.1|GR857992
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|21600987|gb|BQ611327.1|BQ611327
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGTCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|26057410|gb|CA800324.1|CA800324
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192301274|gb|FG990194.1|FG990194
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAAAAAGAACATAGTEST: gi|151396677|gb|EV266550.1|EV266550
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192309229|gb|FG999120.1|FG999120
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|19347029|gb|BM891909.1|BM891909
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|16996636|gb|BM086008.1|BM086008
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|23727090|gb|BU761562.1|BU761562
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|10846245|gb|BF071294.1|BF071294
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|298173888|gb|HO017224.1|HO017224
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTTCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|9259071|gb|BE347218.1|BE347218
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192317984|gb|FK009464.1|FK009464
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192297649|gb|FG992757.1|FG992757
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|13480093|gb|BG509444.1|BG509444
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTTATGATCCAGCAAAAACACCTGCCAA GGCACAAGTGGTGGGEST: gi|51335090|gb|CO978956.1|CO978956
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGG
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|58024615|gb|CX711356.1|CX711356
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|18735223|gb|BM528639.1|BM528639
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|209723462|gb|BW666272.1|BW666272
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192317983|gb|FK009463.1|FK009463
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|298182278|gb|HO026453.1|HO026453
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|42722983|gb|CK768882.1|CK768882
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192324558|gb|FK018714.1|FK018714
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|151410502|gb|EV280317.1|EV280317
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|9565814|gb|BE475323.1|BE475323
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|192297650|gb|FG992758.1|FG992758
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: GCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|57576038|gb|CX549009.1|CX549009
genomic: GCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|24205593|gb|BU964846.1|BU964846
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|9820753|gb|BE556263.1|BE556263
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|26058652|gb|CA801566.1|CA801566
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|7589630|gb|AW705400.1|AW705400
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|9987123|gb|BE661231.1|BE661231
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|151405757|gb|EV275571.1|EV275571
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTEST: gi|21285341|gb|BQ473212.1|BQ473212
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
EST: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAA GGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
genomic: ACCACTGCTGAACCTCCTCCAGCTAATGATCCAGCAAAACCACCTGCAAAgtcagttctt ... gaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGT
agtaggagggataaagaggatgaattattgatggttatcaaagttgaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAGCAATGAAGAAGAGGCAGAGAAGAGCACGAAGAATGCT
tattgat putative branch site (score: 3)
atgaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgatgataacgatatgctaattaaattaaaattattagttattagtaggagggataaagaggatgaattattgatggttatcaaagttgaaattgcagGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTTCAAAGGAACAGCAATGAAGAAGAGGCAGAGAAGAGCACGAAGAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - gatatgc
- - - - - - - - - - - - aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ggaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtt