1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atggtgtttaacaagcaattttggagatcttttatctttttcttcagttacttcataatctttgataaaacttggcattgtggtctattgttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATGGTCAGCATGAATGAGATGGCTGAGATCATTCTTGGCTTTGAGAACAAG
species | Glycine max |
transcript | GLYMA20G36740.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAACACGATCATTTACATTCATTGATGAATGTGTTGAAGGGGTGCTCAG ATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|254317427|gb|GR826372.1|GR826372
genomic: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAG ATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|27808934|gb|CB063356.1|CB063356
genomic: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAG ATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|193320018|gb|FK286869.1|FK286869
genomic: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAG ATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATEST: gi|13789918|gb|BG652509.1|BG652509
genomic: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
EST: CAAACACGATCATTTACATTCATTGATGAATGTGTTGAAGGGGTGCTCAG ATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
genomic: CAAACACGATCATTTACCTTCATTGATGAATGTGTTGAAGGGGTGCTCAGgtatgtcttg ... ttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGAT
agttacttcataatctttgataaaacttggcattgtggtctattgttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATGGTCAGCATGAATGAGATGGCTGAGATCATTCTTGGCTTTGAGAACAAG
ctttgat putative branch site (score: 5)
ttttgttt putative PPT
ataatctttgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtgtttaacaagcaattttggagatcttttatctttttcttcagttacttcataatctttgataaaacttggcattgtggtctattgttttgtttagATTGACTAAATCTGATTTCCGAGAGCCAGTAAATATTGGAAGCGATGAGATGGTCAGCATGAATGAGATGGCTGAGATCATTCTTGGCTTTGAGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
-tggtgtt
- - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaac