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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacagtgaaaattgttttgtttatggagtatttgctaatgttttggacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT

Basic information

species Glycine max
transcript GLYMA20G36740.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193694|gb|HO040342.1|HO040342
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|19270441|gb|BM886697.1|BM886697
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|208306383|gb|GE106660.1|GE106660
EST:     CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: CTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|19347576|gb|BM892456.1|BM892456
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|209716886|gb|BW665485.1|BW665485
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|209703622|gb|BW656578.1|BW656578
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|192302093|gb|FG995227.1|FG995227
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|11687709|gb|BF595385.1|BF595385
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
EST: gi|24135344|gb|BU925854.1|BU925854
EST:     TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAG                         AATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT
genomic: TATCCCCTTCTCTGATTCTCTCCATATATTATCTCAAACCCCTCTCACAGgtttgttcct ... tggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT
     aattttcttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cacagtgaaaattgttttgtttatggagtatttgctaatgttttggacttaattttcttaaccattttctgttcattcgccaaattaatgtggtgtgcagAATGGGAAGTGCTGGAGGAACTGACTATGGTGCATACACTTATGAGAATCTTGAGAGAGAGCCTTACTGGCCATCAGAGAAGCTTAAGATTTCCATCACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC