1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attattattgtaaattctctaacattgtcttttattctcacaataataaaaatgatagtagtttgttatacactgacattataagacttatttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACAAAGGTAAGACGGCAAGCTAGGATTAACATGTCAATGGCTGTCTACGAAG
species | Glycine max |
transcript | GLYMA20G36630.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAG GAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACAEST: gi|20207931|gb|BQ134020.1|BQ134020
genomic: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAGgtattatggt ... tttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACA
EST: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAG GAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACAEST: gi|193353861|gb|FK321617.1|FK321617
genomic: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAGgtattatggt ... tttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACA
EST: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAG GAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACA
genomic: GGAGACACTTCCCTCACCTTAATAACATTTGGCTGTCAACCGAGATGCAGgtattatggt ... tttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACA
ataaaaatgatagtagtttgttatacactgacattataagacttatttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACAAAGGTAAGACGGCAAGCTAGGATTAACATGTCAATGGCTGTCTACGAAG
cttattt CT-rich tract
attataagacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattattgtaaattctctaacattgtcttttattctcacaataataaaaatgatagtagtttgttatacactgacattataagacttatttgattcagGAAGTCATTGACAAGACCAGAGAATATTCTCATTGGAACTTTTACTATACAAAGGTAAGACGGCAAGCTAGGATTAACATGTCAATGGCTGTCTACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT