Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taccaaaatactctcattgttagataaaacggtagtactatattttccatataaattgtattcacaaaaatttacattcctttactcttctatgtctcagGAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCCAATCACAAGCCATGGGTCCCTAGGCCTCTTCTGTGTATGCATGTAAGGA

Basic information

species Glycine max
transcript GLYMA20G36630.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298187492|gb|HO034641.1|HO034641
EST:     GGGGATTGGCCAAAG                         GAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCC
genomic: GGGGATTGGCCAAAGgttgtagtta ... tatgtctcagGAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCC
EST: gi|20207931|gb|BQ134020.1|BQ134020
EST:     AATTAGCTGCAAAAATGGTCCTTGAAAGTCTTGCTGGGGATTGGCCAAAG                         GAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCC
genomic: AATTAGCTGCAAAAATGGTCCTTGAAAGTCTTGCTGGGGATTGGCCAAAGgttgtagtta ... tatgtctcagGAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatataaattgtattcacaaaaatttacattcctttactcttctatgtctcagGAAAGTAGTGCCAGGCCAAGGCCTGATGATATTGATGAATACGTGTGGTCCAATCACAAGCCATGGGTCCCTAGGCCTCTTCTGTGTATGCATGTAAGGA
                               ttcctttactcttcta  CT-rich tract
     ataaattgtattcaca  TA-rich tract