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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCGGAGTCGGAGATCCGCCAGCTCTGTGCCGCTTCCAGAGAGATTTTCCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctgctttcttcttcttttttgaactggttattgtcgtttttaccctagcatcacaccctaccataaccgcatggtttcgtgtttgagcatagg...

Basic information

species Glycine max
transcript GLYMA20G36510.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333103|gb|FK026432.1|FK026432
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|151393757|gb|EV263632.1|EV263632
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|208160446|gb|GD964216.1|GD964216
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193404164|gb|FK367772.1|FK367772
EST:     CCTGCAGCAACCTAATTTGTTGGAGTTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193411133|gb|FK377666.1|FK377666
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|10847715|gb|BF070355.1|BF070355
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|15664270|gb|BI701641.1|BI701641
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|208160388|gb|GD957508.1|GD957508
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|207830827|gb|GD801567.1|GD801567
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCA                         GTGATGTACATGGTCAATATTCTGATCCTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|6070895|gb|AW100282.1|AW100282
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193311595|gb|FK278081.1|FK278081
EST:     CCTGCAGCAACCTAATTTGTTGGAGTTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193326870|gb|FK290749.1|FK290749
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193349608|gb|FK316164.1|FK316164
EST:     CCTGCAGCAACCTAATTTGTTGGAGTTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193423082|gb|FK388875.1|FK388875
EST:     CTTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193567233|gb|FK523360.1|FK523360
EST:     TAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGT
genomic: TAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATG-TACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGC
EST: gi|207833385|gb|GD804516.1|GD804516
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193486263|gb|FK449537.1|FK449537
EST:     CTTGCAGCAACCTAATTTGCTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193335036|gb|FK300996.1|FK300996
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193487757|gb|FK452738.1|FK452738
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|208293566|gb|GE093498.1|GE093498
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193570486|gb|FK525389.1|FK525389
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|41146306|gb|CK606517.1|CK606517
EST:     CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG
EST: gi|193359294|gb|FK326297.1|FK326297
EST:     CCTGCAGCAACCTAATTTGTTGGAGTTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATAGGA
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTAT-GG-
EST: gi|207733346|gb|GD710526.1|GD710526
EST:     CTTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCG                         GTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTG
genomic: CCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctg ... gatctctcagGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTCGGAGTCGGAGATCCGCCAGCTCTGTGCCGCTTCCAGAGAGATTTTCCTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGgtaatttctgctttcttcttcttttttgaactggttattgtcgtttttaccctagcatcacaccctaccataaccgcatggtttcgtgtttgagcatagg

- - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaccc