1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttttccaagttaaacttgacttttataagaggatggagacaaggaaaactcaattcttgtttaaatttggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTCATTGCAGTATGCAAATGACAATGCTTTGCTGCTTGCTAAG
species | Glycine max |
transcript | GLYMA20G36400.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGG GATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTCEST: gi|20814892|gb|BQ299370.1|BQ299370
genomic: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGGgtaagttttc ... tggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTC
EST: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGG GATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTCEST: gi|151397805|gb|EV267678.1|EV267678
genomic: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGGgtaagttttc ... tggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTC
EST: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGG GATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAA-CGTTCCTGACAGTTCEST: gi|192326003|gb|FK016890.1|FK016890
genomic: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGGgtaagttttc ... tggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTC
EST: GTAACCCCAGATA-GGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGG GATTCTTTGTTGGCAAATAGCGCGGGGAGTTEST: gi|192302644|gb|FG996338.1|FG996338
genomic: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGGgtaagttttc ... tggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTT
EST: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGG GATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTC
genomic: GTAACCCCAGATAAGGCCAATATTGGGGCTGTAATTGGGTTTCTTTTTGGgtaagttttc ... tggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTC
ttataagaggatggagacaaggaaaactcaattcttgtttaaatttggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTCATTGCAGTATGCAAATGACAATGCTTTGCTGCTTGCTAAG
aattcttgtttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttccaagttaaacttgacttttataagaggatggagacaaggaaaactcaattcttgtttaaatttggaacatagGATTCTTTGTTGGCAAATAGCGCGGGGAGTTCAAAACGTTCCTGACAGTTCATTGCAGTATGCAAATGACAATGCTTTGCTGCTTGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT