1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTCTCTCGAGCATGGGAACTTGCTGACACATCAACCTCCCACTCTTTAGTGAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgatgagaaagtaattgatgagtttttaatagaacacttcctccaaaaaaaaccctcccctaaaattataaaggattttagcttgaagatgtctttgttcttttgttgcttag
species | Glycine max |
transcript | GLYMA20G36400.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAG CACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGACEST: gi|151399393|gb|EV269264.1|EV269264
genomic: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgat ... tgttgcttagCACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
EST: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTCATGCCAAATCAG CACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGACEST: gi|151397805|gb|EV267678.1|EV267678
genomic: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgat ... tgttgcttagCACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
EST: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAG CACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGACEST: gi|192326003|gb|FK016890.1|FK016890
genomic: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgat ... tgttgcttagCACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
EST: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAG CACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGACEST: gi|192302644|gb|FG996338.1|FG996338
genomic: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgat ... tgttgcttagCACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
EST: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAG CACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
genomic: GAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgat ... tgttgcttagCACTTGGAAAGCGTTTGGTATCTGCCGGAAGAAGGTTTCAATCAATGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCTCGAGCATGGGAACTTGCTGACACATCAACCTCCCACTCTTTAGTGAAAAAGCTCCCTTTGATTGAGGCCAAGCTGACGGGTTATGCCAAATCAGgtaaatcgatgagaaagtaattgatgagtttttaatagaacacttcctccaaaaaaaaccctcccctaaaattataaaggattttagcttgaagatgtctttgttcttttgttgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA