1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaatgatcatacagtaatattggatacatatcctatacgatacacgtatcgtgattgtgcatcacagagcatagtttcataattaaattggaattgcagGTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGGCTGGATCAACACGGGGATGCTGTCCCCGGAGACATTGTATGGGGCGTAC
species | Glycine max |
transcript | GLYMA20G36230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTTCCAGATGCCAG GTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGGEST: gi|10846857|gb|BF069595.1|BF069595
genomic: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTTCCAGATGCCAGgtaataatca ... ggaattgcagGTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGG
EST: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTACCAGATGCCAT GTTTTCTGAGGTAGCTGAEST: gi|19346918|gb|BM891806.1|BM891806
genomic: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTTCCAGATGCCAGgtaataatca ... ggaattgcagGTTTTCTGAGGTAGCTGA
EST: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTTCCAGATGCCAG GTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGG
genomic: TGGGGAGACACTCCCAGGTATTGGCGCTGGACTTCGCTTCCAGATGCCAGgtaataatca ... ggaattgcagGTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGG
cgtatcgtgattgtgcatcacagagcatagtttcataattaaattggaattgcagGTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGGCTGGATCAACACGGGGATGCTGTCCCCGGAGACATTGTATGGGGCGTAC
tttcataattaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgatcatacagtaatattggatacatatcctatacgatacacgtatcgtgattgtgcatcacagagcatagtttcataattaaattggaattgcagGTTTTCTGAGGTAGCTGAGCTAAGGAGTGTGTGCTGGTTGGAAATCCGGGGCTGGATCAACACGGGGATGCTGTCCCCGGAGACATTGTATGGGGCGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - -tcataca
- - - - - - - - - - - - - - - - - - - - atacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg