1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattcattgttatctctgttgtcggttgtaataattgtttgtggtgaagcgattaattatacaacattgtattaatgtgggaaatggaatgatgatacagAGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCGAGGAATCTCTTCATTGTATGGGGAGACACTCCCAGGTATTGGCGCTGGA
species | Glycine max |
transcript | GLYMA20G36230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTTCTCTATCTCTGCCGAAAACCGCTCCTCATAGACGATGGTAAAAAG AGCTATCATCTGGATAAAGTATACGGGAAGAAATGCTACATGTTATCAGCGEST: gi|19346918|gb|BM891806.1|BM891806
genomic: TCTTTCTCTATCTCTGCCAAAAACCGCTCCTCATAGACGATGGTAAAAAGgtacctaaac ... gatgatacagAGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCG
EST: TCTTTCTCTATCTCTGCCAAAAACCGCTCCTCATAGACGATGGTAAAAAG AGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCG
genomic: TCTTTCTCTATCTCTGCCAAAAACCGCTCCTCATAGACGATGGTAAAAAGgtacctaaac ... gatgatacagAGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCG
gaagcgattaattatacaacattgtattaatgtgggaaatggaatgatgatacagAGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCGAGGAATCTCTTCATTGTATGGGGAGACACTCCCAGGTATTGGCGCTGGA
tattaat putative branch site (score: 2)
attaattatacaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcattgttatctctgttgtcggttgtaataattgtttgtggtgaagcgattaattatacaacattgtattaatgtgggaaatggaatgatgatacagAGCTTTCAACTGGATAAAGTATACGGTAAGAAATGCTACATGTTATCAGCGAGGAATCTCTTCATTGTATGGGGAGACACTCCCAGGTATTGGCGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - tgttgtc
- - - - - - - - - - - -ggttgta
- - - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggga