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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGATAAgtaagtagaattccgttttacttttgttaattttgcacttactttttcattcaaatatggaactataagtttcttgtctgaaatgtattttaccatgtttcttaagttattttcag

Basic information

species Glycine max
transcript GLYMA20G36160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g00350.t01 (Vitis vinifera), 5'ss of exon 8
GGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGATAAgtaagtagaattccgttttacttttgttaattttgcacttactttttcattcaaatatggaactataagtttcttgtctgaaatgtattttaccatgtttcttaagttattttcag
||||||| || || |||||||| ||||| ||||| ||||| ||  |||| ||||| ||||||||||||||||||||||||    ||||  | ||      ||| ||  |     |  ||||| ||   ||||||  |       || ||   ||||    ||    |   |||  |  |    | | |||    | | |   | ||          
GGTTTGCAAAGCGTTTCTTACATCCCGAAATAGTGGCAGAGTACAATTACATTTTTCTTTGGGATGAGGACCTAGGAGTTACAGATTTCAACCCTCGGCGgtatgttta---tggcattactcttaaaaattttaaataagtacttcca---aaatggttaatctca--cttcccggttttggtatgtttggaaaagatgaatgagca--------

upper sequence: GLYMA20G36160.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S75_170V6.1 (Physcomitrella patens), 5'ss of exon 7
GGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGATAAgtaagtagaattccgttttacttttgttaattttgcacttactttttcattcaaatatggaactataagtt-tcttgtctgaaatgtattttaccatgtttcttaagttattttcag
|||  |||||||||||| | ||||| || || || |     ||  |||| |||||||||||||| |||||||| |||||||| |||||  || | || | || |  | ||    |       |   | | |||||   |    | || || |||  | ||||| |       |  |||   |  || |||||  ||  |    ||   |        
GGTACGCCAAACGATTCATGCACCCAGATATTGTGGACCGTTACAATTACATTTTCCTTTGGGACGAGGACCTCGGAGTTGAACATTTCAATGCTGAAAGgtga--aaaaccttg------atccctcacttttgtg-tggtgtgtttatgcaataagggaaccactctcaattctgttgaacttgaattttgacacatcctctagtct--------