Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtctaggtgatttcacattccatttccatccatattttaaaccatttcatatttcatatatcctaaatacgttttcattgactagGTGGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGAT

Basic information

species Glycine max
transcript GLYMA20G36160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g00350.t01 (Vitis vinifera), 3'ss of exon 7
gtaggtgtctaggtgatttcacattccatt--tccatccatattttaaaccatttcatatttc---atatatcctaaatacgttt-------tcattgactagGTGGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGAT
||| ||| ||  |   || || || || ||  ||  |    ||   |||   |||||| ||     |||  | || |   |  ||       | | |||| ||||||||||| || || |||||||| ||||| ||||| ||||| ||  |||| ||||| ||||||||||||||||||||||||    ||||  | ||    
gtaagtggcttaggtcttgca-atcccgttcatcattttgaatgggaaagtgtttcattttcataaataagttctcatggctcttcttttgcttaatgacaagGTGGTTTGCAAAGCGTTTCTTACATCCCGAAATAGTGGCAGAGTACAATTACATTTTTCTTTGGGATGAGGACCTAGGAGTTACAGATTTCAACCCTCGG

upper sequence: GLYMA20G36160.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S75_170V6.1 (Physcomitrella patens), 3'ss of exon 6
-gtaggtgtctaggtgatttcac-attccatttccatccatattttaaaccatt-----tcatatttcatatatcctaaatac--gttttcattgactagGTGGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGAT
 ||  ||    ||  ||    || |   |  | | |  |||  | |   |||       |||  | | |  || || |||  |   |       || ||||||||  |||||||||||| | ||||| || || || |     ||  |||| |||||||||||||| |||||||| |||||||| |||||  || | || 
tgtcagttagcagcggagggtacgaagtcggtgcgactcatcatgtgtcccacgcatgatcacttgtgaactaacccaaaagctgatgcctggagaatagGTGGTACGCCAAACGATTCATGCACCCAGATATTGTGGACCGTTACAATTACATTTTCCTTTGGGACGAGGACCTCGGAGTTGAACATTTCAATGCTGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattttaaaccatttcatatttcatatatcctaaatacgttttcattgactagGTGGTTTGCCAAACGATTCTTACACCCCGACATAGTTGCAGAATATGATTATATTTTCCTTTGGGATGAGGACCTAGGAGTTGAGCATTTTCATCCAGAT
                              tcctaaa  putative branch site (score: 2)
                                         ttttcatt  putative PPT
                  atatttcatatatcct  TA-rich tract