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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtataagcttaatttgaaaccattcattctttctgtgataatgtatgcttaattattttatggccattttctatatttttgtaattttgtagTGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGTGCCCAACAAATGTGCAGCATGTGACACACATTGGTTGGGATGGTTTTGC

Basic information

species Glycine max
transcript GLYMA20G36130.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305157|gb|CD390360.1|CD390360
EST:     TAGCTTCAATAGGCTGTTGAAGGGTTTCAAGAACATTCCTCAGTTGTTTG                         TGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGT
genomic: TAGCTTCAATAGGCTGTTGAAGGGTTTCAAGAACATTCCTCAGTTGTTTGgtgagtataa ... aattttgtagTGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGT
EST: gi|31561208|gb|CD487046.1|CD487046
EST:     TAGCTTCAATAGGCTGTTGAAGGGTTTCAAGAACATTCCTCAGTTGTTTG                         TGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGT
genomic: TAGCTTCAATAGGCTGTTGAAGGGTTTCAAGAACATTCCTCAGTTGTTTGgtgagtataa ... aattttgtagTGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgtatgcttaattattttatggccattttctatatttttgtaattttgtagTGAATAAAGAGGAGGAGTTGGAAGAGGTGGAAATGGACATGGAAATAGGGTGCCCAACAAATGTGCAGCATGTGACACACATTGGTTGGGATGGTTTTGC
         gcttaat  putative branch site (score: 4)
                            attttctatatttttg  TA-rich tract