Sequence
atgc intronic sequence ATGC exonic sequencegtcagtctcttaatttggtatcgatcatattatttttccaacattagtaaagggtcaagctttaattaattcagataattgttccttaattcatttcaatcagatctgttaataattattatgtgatgcattcagAAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCATGAGGAACTTGCTGAGGTTTCATGAGGATGTCCAGAAATCTAAAACATT
Basic information
species | Glycine max |
transcript | GLYMA20G36130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31305157|gb|CD390360.1|CD390360EST: AGATCAAGATCAGACACTGATTCACCAACTGCAGCAACAA AAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCA
genomic: AGATCAAGATCAGACACTGATTCACCAACTGCAGCAACAAgtcagtctct ... atgcattcagAAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCA
EST:
gi|31561208|gb|CD487046.1|CD487046EST: TCATCCAAGAAGATCAAGATCAGACACTGATTCACCAACTGCAGCAACAA AAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCA
genomic: TCATCCAAGAAGATCAAGATCAGACACTGATTCACCAACTGCAGCAACAAgtcagtctct ... atgcattcagAAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttccttaattcatttcaatcagatctgttaataattattatgtgatgcattcagAAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCATGAGGAACTTGCTGAGGTTTCATGAGGATGTCCAGAAATCTAAAACATT
tgttaat putative branch site (score: 3)
agatctgttaataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtctcttaatttggtatcgatcatattatttttccaacattagtaaagggtcaagctttaattaattcagataattgttccttaattcatttcaatcagatctgttaataattattatgtgatgcattcagAAGGACCAAAAGGTGACAAGGATATTTCAGAGAGTTTGTCTGGTGAAAGCATGAGGAACTTGCTGAGGTTTCATGAGGATGTCCAGAAATCTAAAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG