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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTAGAGCTGAAAGTAAGGATGTGCTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAGgtatgtctttttttttttttttttaatataacgttgaggacttaatttaccaagttagtcttgtggttgtggagttttttagaataatttagataaaata...

Basic information

species Glycine max
transcript GLYMA20G36080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g03010.t01 (Vitis vinifera), 5'ss of exon 2
ACCGTAGAGCTGAAAGTAAGGATGTGCTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAGgtatgtctttttttttttttttttaatataacgttgaggacttaatttaccaagttagtct----tgtggttg-tggagttttttagaataatttagataaaata---------------------
|| || ||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| || | |||||| ||| |     |       |||  | |  |   ||  |||||| |  ||  | || |    | || ||| |   | | | ||  |||  | | ||                           
ACTGTGGAGCTCAAAGTAAGGATGTGCTGCACCGGCTGCGAGAGAGTCGTTAAAAATGCCATTTTCAAGCTTAGAGgtatatctataaagataa-----taaattcaaatcatgggtttaattaataaaactggtatacaatttgattgatatcgatatgtaccatagctcacatgttgggtctatgatggcatgtacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254228|gb|BE821994.1|BE821994
EST:     CTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAG                         GCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG
genomic: CTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAGgtatgtcttt ... tttcatatagGCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG
EST: gi|6455592|gb|AW186275.1|AW186275
EST:     TGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAG                         GCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG
genomic: TGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAGgtatgtcttt ... tttcatatagGCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG
EST: gi|151402033|gb|EV271846.1|EV271846
EST:     CTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAG                         GCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG
genomic: CTGCACTGGCTGCGAGAGAGTTGTTAAAAACGCCATTTACAAACTCAAAGgtatgtcttt ... tttcatatagGCATTGATTCAGTGGAGGTGGACTTAGAGATGGAAAGGGTGAGGGTAGGTG