1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttggtttctcgtctttttcagttcagtttttgtttaattatgttataatttacatgacatctatgtttttttttttcacttcctgatcaaaatgactagGTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGCACAGCGACAATTCAGTCTTTGTATGACTATGTTGACTCACTTGGATGTT
species | Glycine max |
transcript | GLYMA20G35940.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCCCAATCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGCEST: gi|254334583|gb|GR844368.1|GR844368
genomic: AAGCCCAATCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAGgtacggtatc ... aaatgactagGTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGC
EST: AAGCCCAATCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAG GTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGC
genomic: AAGCCCAATCTCTTGGTGAAGAACCTGAAAAAGGACCTAATGTTACACAGgtacggtatc ... aaatgactagGTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGC
ataatttacatgacatctatgtttttttttttcacttcctgatcaaaatgactagGTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGCACAGCGACAATTCAGTCTTTGTATGACTATGTTGACTCACTTGGATGTT
tcctgat putative branch site (score: 3)
atctatgttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtttctcgtctttttcagttcagtttttgtttaattatgttataatttacatgacatctatgtttttttttttcacttcctgatcaaaatgactagGTTTTGGTACGGTTTCCAACTGGTGAACGCAAGGAAAGGAGGTTCTACAGCACAGCGACAATTCAGTCTTTGTATGACTATGTTGACTCACTTGGATGTT
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