1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttatgaagctgaatagaattatctgcatgaatttcatttttttattatatacagattccagcactagaacataaatttaatctattttatgtaatacagGTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTGCTTGAAGAAAGCTCCCCCGTCCTTGCTGCGGCTAGGCTTGATGCAGAAG
species | Glycine max |
transcript | GLYMA20G35940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCTCGTCATGGCCGCCACCAATCAGAGGATCCCGCTCCTTCAACAG GTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTGEST: gi|209713077|gb|BW653784.1|BW653784
genomic: GCGCTCTCGTCATGGCCGCCACCAATCAGAGGATCGCGCTCCTTCAACAGgttatttttt ... tgtaatacagGTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTG
EST: GCGCTCTCGTCATGGCCGCCACCAATCAGAGGATCGCGCTCCTTCA-CAG GTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTG
genomic: GCGCTCTCGTCATGGCCGCCACCAATCAGAGGATCGCGCTCCTTCAACAGgttatttttt ... tgtaatacagGTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTG
ttatatacagattccagcactagaacataaatttaatctattttatgtaatacagGTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTGCTTGAAGAAAGCTCCCCCGTCCTTGCTGCGGCTAGGCTTGATGCAGAAG
atttaat putative branch site (score: 4)
actagaacataaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgaagctgaatagaattatctgcatgaatttcatttttttattatatacagattccagcactagaacataaatttaatctattttatgtaatacagGTTGAAGGTCCAAAATCCAGTGAGGAGCTGCTGGTGACACTGCAGAGAGTGCTTGAAGAAAGCTCCCCCGTCCTTGCTGCGGCTAGGCTTGATGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -gaagctg
- - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagcac