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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCAGACGGGCTTCTGTTGATATCTTCTTAAAGGCAGCTGGGTATCTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtttgtacccatttaatacaatcagttgattgtcacacaattttgtgtaatctaaacaatcttccttatttttttgtattactcctctcactgttggttctgattttag

Basic information

species Glycine max
transcript GLYMA20G35900.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35900.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G131969_T04 (Zea mays), 5'ss of exon 6
AAAGCAGACGGGCTTCTGTTGATATCTTCTTAAAGGCAGCTGGGTATCTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtt-tgtacccatttaatacaatcagttgattgtcacacaattttgtgtaatctaaacaat-cttccttatttttttgtattactcctctcactgttggttctgattttag
| ||  |||||||| |||||||| ||||||| ||||||||||| || || |||||||| ||  ||||||| || ||  || ||||    || || ||||| ||||| | ||||   |||     |    | ||  |  ||   |  || ||  |  ||  || || |     |    |    | | | | |    |            
AGAGTCGACGGGCTACTGTTGATGTCTTCTTGAAGGCAGCTGGATACCTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtactc-tttag--caacttcctagcaggcaggc--ttcaattcaaacttgaagatatttactgaaacactcccgtctaacatgtgaatagcag------------

upper sequence: GLYMA20G35900.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G17940.1 (Arabidopsis thaliana), 5'ss of exon 7
AAAGCAGACGGGCTTCTGTTGATATCTTCTTAAAGGCAGCTGGGTATCTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtttgtacccatttaatacaatcagttgattgtcacacaattttgtgtaatctaaacaatcttccttatttttttgtattactcctctcactgttggttctgattttag---
||| ||||||  ||||  |||||||||||||||| |||||||| |||||||| ||||| || | ||||||||| || |||||  |||  || |  |||||||||       ||     | |  | |||  ||| | | |  ||  | | | | || |    | || |     | |  || | ||||  ||||  |||   |||  |   
AAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCCGTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGgtttgtaggtgacaaagtttctaaagtcatt--cactctactc-gttgacttttatcagttgagcctaatg----gcagaacccttctctttgtt--ttcatttttctgcag

upper sequence: GLYMA20G35900.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G73390.2 (Arabidopsis thaliana), 5'ss of exon 7
AAAGCAGACGGGCTTCTGTTGATATCTTCTTAAAGGCAGCTGGGTATCTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtttgtacccatttaatacaatcagttgattgtcacacaattttgtgtaatctaaacaatcttccttatttttttgtattactcctctcactgttggttctgattttag
|||  || || |||||  | |||||||||||||| |||||||| || || ||||||||||| | |||||||||||| || ||  |   ||| |  |||||  ||         |    |  ||  |   |  ||   ||||      ||| | | |   | || |       ||  |  | || |  || ||    | |       
AAAATAGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGTGCTGTGAAGCATGTTCTTCCTCATTTTTCAACCGAGCAGAGgttcatatatgacagttttcttatgtcaaccattgca-gtttttaatagctctgatcgactctactgacacgacggttgtttttctttgccttttc-cacag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398827|gb|EV268698.1|EV268698
EST:     CTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAG                         GAGAAATTTACCAGTAGATCTTGCAGAAGGAGTTCTTCGAGCACTCTGTCT
genomic: CTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtttgtaccc ... ctgattttagGAGAAATTTACCAGTAGATCTTGCAGAAGGAGTTCTTCGAGCACTCTGTCT
EST: gi|151404759|gb|EV274573.1|EV274573
EST:     CTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAG                         GAGAAATTTACCAGTAGATCTTGCAGAAGGAGTTCTTCGAGCACTCTGTCT
genomic: CTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtttgtaccc ... ctgattttagGAGAAATTTACCAGTAGATCTTGCAGAAGGAGTTCTTCGAGCACTCTGTCT