1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCCACCACTTTGGGGGACTATGAAATATCTTTACGAGAAAATTCCTAAGGATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcattagtgcattagtaaattgttttaaaatatcatttcatagttgataatgattcttgcttaacgaaaagtaaagaagttgaaggactgataaaatcatgtgttttgttgtcaacgcttattacag
species | Glycine max |
transcript | GLYMA20G35900.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACCEST: gi|193623310|gb|FK574660.1|FK574660
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
EST: GATACTTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACCEST: gi|151398827|gb|EV268698.1|EV268698
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
EST: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACCEST: gi|151404759|gb|EV274573.1|EV274573
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
EST: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACCEST: gi|151394195|gb|EV264066.1|EV264066
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
EST: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACCEST: gi|22932509|gb|BU549648.1|BU549648
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
EST: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAG AATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
genomic: GATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcatta ... cttattacagAATCATGGAGACAGCACCAACATTGCCTGATTTTGCCTTGGCTTTGAAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCACCACTTTGGGGGACTATGAAATATCTTTACGAGAAAATTCCTAAGGATACCTCAAGCAAGGTGCGAATAAACCGTGATCTGTACTCCTATGAGAGgtaagcattagtgcattagtaaattgttttaaaatatcatttcatagttgataatgattcttgcttaacgaaaagtaaagaagttgaaggactgataaaatcatgtgttttgttgtcaacgcttattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG