Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31307938|gb|CD393141.1|CD393141EST: CTATGTCTCTCCTTGTTAATTCTCCTCTGCTGCCACTGCAAAGTACTCGG TGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
genomic: CTATGTCTCTCCTTGTTAATTCTCCTCTGCTGCCACTGCAAAGTACTCGGgtgcgttatc ... taattgacagTGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
EST:
gi|31464115|gb|CD406143.1|CD406143EST: TTCTCCTCTGCTGCCACTGCAAAGTACTCGG TGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
genomic: TTCTCCTCTGCTGCCACTGCAAAGTACTCGGgtgcgttatc ... taattgacagTGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
EST:
gi|298172929|gb|HO019913.1|HO019913EST: CTATGTCTCTCCTTGTTAATTCTCCTCTGCTGCCACTGCAAAGTACTCGG TGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
genomic: CTATGTCTCTCCTTGTTAATTCTCCTCTGCTGCCACTGCAAAGTACTCGGgtgcgttatc ... taattgacagTGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcacttcttcattttctcttcaataacgtatctgattcatttaattaattgacagTGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATAATAGGAGGAGGAATGAGCACAAACATCTTTGGAACTGCGAAAAGGAATG
tatctgattcatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgttatccttctattcccacctcacttcttcattttctcttcaataacgtatctgattcatttaattaattgacagTGGTTGAAACCGAAGCAAGAAGCTAGGTTTTTGTCACACGGGCCAACCATAATAGGAGGAGGAATGAGCACAAACATCTTTGGAACTGCGAAAAGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA