1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatttgtaagttaactttgctttggggaatgaatagcggctggttctataccgttttgctgtttttgtgttcacttgggatggatttgctttgtaccagGTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGAAACCGAGCTGCTCGCCAAAGAATTCCTCACAGGGTATGGACTGATGAGG
species | Glycine max |
transcript | GLYMA20G35830.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG GTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGAEST: gi|6071913|gb|AW101300.1|AW101300
genomic: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAGgtcagtgaac ... tttgtaccagGTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGA
EST: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG GTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGAEST: gi|19053838|gb|BM732505.1|BM732505
genomic: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAGgtcagtgaac ... tttgtaccagGTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGA
EST: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAG GTACGGGTGAGGATTGGA
genomic: GTACAAGATCTATAACAAGGCTCTCAAAAGAATTCAGGATGATGGTCAGgtcagtgaac ... tttgtaccagGTACGGGTGAGGATTGGA
tctataccgttttgctgtttttgtgttcacttgggatggatttgctttgtaccagGTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGAAACCGAGCTGCTCGCCAAAGAATTCCTCACAGGGTATGGACTGATGAGG
tttgcttt CT-rich tract
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttgtaagttaactttgctttggggaatgaatagcggctggttctataccgttttgctgtttttgtgttcacttgggatggatttgctttgtaccagGTACGGGTGAGGATTGGATTTCCAATTACTGGTTATGGTCAGGAGAGTAGAAACCGAGCTGCTCGCCAAAGAATTCCTCACAGGGTATGGACTGATGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA