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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATGTCCCTCCACCCCCTTCCTTCCTAATCCCACGATCAAGGCCCCTTTCTTCCAAAACATCCCAATCCAACGAAGCCGCTGAAAGCTCCAATAAGgtccgccagtgaacgactcaattactctgcttccaaatcaaaacctatttcgatctattcgttttttgtag

Basic information

species Glycine max
transcript GLYMA20G35830.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6071913|gb|AW101300.1|AW101300
EST:     GCTGAAAGCTCCAATAAG                         GCCAAAAAGGACGTGGCAAACGTTGAAGATCCCTTTAGTGCCCCTACCTAT
genomic: GCTGAAAGCTCCAATAAGgtccgccagt ... ttttttgtagGCCAAAAAGGACGTGGCAAACGTTGAAGATCCCTTTAGTGCCCCTACCTAT
EST: gi|19053838|gb|BM732505.1|BM732505
EST:     TTTCTTCCAAAACATCCCAATCCAACGAAGCCGCTGAAAGCTCCAATAAG                         GCCAAAAAGGACGTGGCAAACGTTGAAGATCCCTTTAGTGCCCCTACCTAT
genomic: TTTCTTCCAAAACATCCCAATCCAACGAAGCCGCTGAAAGCTCCAATAAGgtccgccagt ... ttttttgtagGCCAAAAAGGACGTGGCAAACGTTGAAGATCCCTTTAGTGCCCCTACCTAT
EST: gi|4290884|gb|AI441682.1|AI441682
EST:     TTTCTTCCAAAACATCCCAATCCAACGAAGCCGCTGAAAGCTCCAATAAG                         GCCAAAAAGGACGTGGNCAA-CGTTGAAGATCCCTTTAGTGCCCCTACCTA
genomic: TTTCTTCCAAAACATCCCAATCCAACGAAGCCGCTGAAAGCTCCAATAAGgtccgccagt ... ttttttgtagGCCAAAAAGGACGTGG-CAAACGTTGAAGATCCCTTTAGTGCCCCTACCTA