Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaggtgtaaaatagttttaagctgtttagagtatattttgtctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
Basic information
species | Glycine max |
transcript | GLYMA20G35770.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35770.3 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g01060.2 (Oryza sativa), 3'ss of exon 5
gtaaaaggtgtaaaatagttttaagctgtttagagtatattttgt-ctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
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------gtggctatgcacaataagactcactacattcttttttctactcctttcccaggtatttgacagcttatgtttct-tggtagGAAGCACAAATACTCAACGAGAAACATGTTTTGGAAAAACGCATTGCATACATGCGAATG
upper sequence: GLYMA20G35770.3 (Glycine max), 3'ss of exon 7
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaaaaggtgtaaaatagttttaagctgtttagagtatattttgtctcaatgtccattttggtgactgatcatttttcca--------taccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
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gtaaatcgctagttttaatctctag-tgttttatgcatacttggt--tgatttacactacattgtctgaataaccttttggcctgtttttttagGAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21255870|gb|BQ452758.1|BQ452758EST: AAGAAGAGATCATCCTATTAAGGAAACGTCTTGCTGATTATTCTGTAAAG GAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATAT
genomic: AAGAAGAGATCATCCTATTAAGGAAACGTCTTGCTGATTATTCTGTAAAGgtaaaaggtg ... tccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agagtatattttgtctcaatgtccattttggtgactgatcatttttccataccagGAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG
gactgat putative branch site (score: 3)
tcatttttcc CT-rich tract
atattttgt TA-rich tract