Sequence
atgc intronic sequence ATGC exonic sequence...gaatgtgtattttgtaaactgagttagacagcgtttgattttctgctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
Basic information
species | Glycine max |
transcript | GLYMA20G35770.4 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35770.4 (Glycine max), 3'ss of exon 16
lower sequence: AT5G23510.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------------------------------------------------gaatgtgtattttgtaaactgagttagacagcgtttgatttt-ctgctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
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gtttaatatctttttatatgaatgagatcatatgttagagttgttcttctctgtggaaagctaggattatgattttgtggtatactggaatcttgatatggaaagtacagttgtgttagatgtgcttacacagttgttttctaccgattgtttttcagttttttcatgttgctactttctgatttcagGGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21888872|gb|BQ742085.1|BQ742085EST: GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAG GGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGA
genomic: GTACATTACTTGCCATTGAAGTCCAACCTCTGGATAACAGGAAGCGCAAGgtactttttc ... gtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattggatatctagtctttttttatactatatctcatgcattctgtggttatagGGAGAACCTGTGAAGGTTTTTGCCAATGATAATAAAAAGATTGCTTGTG
tagtctttttttatac TA-rich tract