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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACCGAGGGCCCCGACGCGCCGGCGGTGTGCCTCGACGTCGTCGAGGAGGATGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGgtgagttgactcgccagtacttcagccggttctcttttttgcatgaatcgctttggttttatcgcttttttcagctttctcttcggctcccggttcccga...

Basic information

species Glycine max
transcript GLYMA20G35670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35670.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0130g00210.t01 (Vitis vinifera), 5'ss of exon 1
CTCACCGAGGGCCCCGACGCGCCGGCGGTGTGCCTCGACGTCGTCGAGGAGGATGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGgtgagtt--gactcgccagtacttcagccggttctcttttttgcatgaatcgctttggttttatcgcttttttcagctttctcttcggctcccggttcccga
  |   |  |   |   | || | |  || |||||||| ||||| || ||||| || || |||||||||||||| ||||| || |||||||||||  ||||||||||  || || |||  ||          || |||   |           |||   | |||||   |       |||     ||       |  |    
GACGGAGGCGAGTCGTCCCCGGCTGTCGTCTGCCTCGATGTCGTGGAAGAGGACGTGGCGAGATCCAGATCCGTCTACTGTGACCAGTGCCGAGTCGTCGgtgagtttcgagtcaccaccaccgagtgaaactcgcttacgttttccctctcttttctatatatcgtggtaccttatttttatcgcgatatattgaacgt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208200181|gb|GD996054.1|GD996054
EST:     GGATGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCG                         GTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAG
genomic: GGATGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGgtgagttgac ... tattatttagGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAG