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gtattttgtttttctttttatgtctttgttttttcatcatattttgattatttgtgaaataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGAACTGGTGGAGTTACAAATGCTGCAGTCACATCATCTTTACTTGAGTCG
species | Glycine max |
transcript | GLYMA20G35600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|208311212|gb|GE102988.1|GE102988
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGANCACCAGEST: gi|193344284|gb|FK312814.1|FK312814
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|208037307|gb|GD836174.1|GD836174
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|193425329|gb|FK388602.1|FK388602
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|17519864|gb|BM188906.1|BM188906
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|193354939|gb|FK322548.1|FK322548
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|193339490|gb|FK302737.1|FK302737
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAAATAATAEST: gi|207809763|gb|GD781837.1|GD781837
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAA-TA-T-
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|193361573|gb|FK324355.1|FK324355
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGEST: gi|193400816|gb|FK368737.1|FK368737
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
EST: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAG ACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
genomic: TTTATATGTGGTGGAGCATTTATTGATCTTGAGAAAACCATTTCAGAGAGgtattttgtt ... aataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAG
tctttttatgtctttgttttttcatcatattttgattatttgtgaaataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGAACTGGTGGAGTTACAAATGCTGCAGTCACATCATCTTTACTTGAGTCG
ttttgat putative branch site (score: 4)
ttttttcatcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgtttttctttttatgtctttgttttttcatcatattttgattatttgtgaaataaaccagACGACAAGATTCTTCAATTGGTTTTGGATCACCAGTCCGTTCCAATATGAGAACTGGTGGAGTTACAAATGCTGCAGTCACATCATCTTTACTTGAGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG