1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttactgtacttgttatgacttatgagtgcaagcaagtgatggggagtgtggacggtaagaggtatgtaaatttgtctgaaactttacccctaaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCA
species | Glycine max |
transcript | GLYMA20G35600.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAAT GTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAEST: gi|16346887|gb|BI972482.1|BI972482
genomic: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAATgtaagcagtt ... taaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCA
EST: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAAT GTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAEST: gi|17519864|gb|BM188906.1|BM188906
genomic: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAATgtaagcagtt ... taaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCA
EST: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAAT GTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCA
genomic: CAAAAAATGCTCTTGCTAAGCAGTACAAGAAATTATTTAACATGAATAATgtaagcagtt ... taaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCA
gtgtggacggtaagaggtatgtaaatttgtctgaaactttacccctaaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCA
ccctaaa putative branch site (score: 3)
ctttacccct CT-rich tract
tatgtaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactgtacttgttatgacttatgagtgcaagcaagtgatggggagtgtggacggtaagaggtatgtaaatttgtctgaaactttacccctaaacttcagGTAAAGCTACACTTCACAGAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- actgtac
- - - - - tgttatg
- - - - - - - - - - - - - tgcaagc
- - - - - - - - - - - - - - - - - agtgatg
- - - - - - - - - - - - - - - - - - - - -gggagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg