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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAATGGAAACCTTTCACGCTTCCTGGATGTTAAGGTAGGAGGTGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttacccatttattctaccctttattaaattaccttcctataatgtaattcaaagtactttcatatgcttaatatttgaggtctatatactaaaccttgttttcttgatcag

Basic information

species Glycine max
transcript GLYMA20G35520.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205963|gb|BU965216.1|BU965216
EST:     AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAG                         GTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
genomic: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttacccatt ... tcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
EST: gi|151402079|gb|EV271892.1|EV271892
EST:     AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAG                         GTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
genomic: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttacccatt ... tcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC