1 5' 3' | 2 5' 3' | 3 5' 3' |
gttacccatttattctaccctttattaaattaccttcctataatgtaattcaaagtactttcatatgcttaatatttgaggtctatatactaaaccttgttttcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATTGATCAGCGGTACAATCCATT
species | Glycine max |
transcript | GLYMA20G35520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAG GTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACCEST: gi|151402079|gb|EV271892.1|EV271892
genomic: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttacccatt ... tcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
EST: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAG GTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
genomic: AGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGgttacccatt ... tcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACC
ctttcatatgcttaatatttgaggtctatatactaaaccttgttttcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATTGATCAGCGGTACAATCCATT
tactaaa putative branch site (score: 1)
ccttgttttctt CT-rich tract
atatgcttaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacccatttattctaccctttattaaattaccttcctataatgtaattcaaagtactttcatatgcttaatatttgaggtctatatactaaaccttgttttcttgatcagGTATGGCATATTTACATGCATACAAAGCAAACAAGCCCGTTTTGGTTCACCAAAACATCTCAGCTGACAAAGTACTCATTGATCAGCGGTACAATCCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA