1 5' 3' | 2 5' 3' | 3 5' 3' |
...acgtatataagtgtatagagacacttacatacacatagctacctctactagtggtatagtatatgatagtaaaattaatatatgtttctgctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGGAGCAGATGATTAAAGAAGCAGATTTGGATGGTGATGGCCAAGTTAACT
species | Glycine max |
transcript | GLYMA20G35440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACGTATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|10252591|gb|BE820357.1|BE820357
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192329953|gb|FK021539.1|FK021539
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTCTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192334235|gb|FK026616.1|FK026616
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192329952|gb|FK021538.1|FK021538
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTCTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192334236|gb|FK026617.1|FK026617
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATTTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192311224|gb|FK003737.1|FK003737
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|192311223|gb|FK003736.1|FK003736
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|15000001|gb|BI320815.1|BI320815
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|7589101|gb|AW704882.1|AW704882
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|151411418|gb|EV281229.1|EV281229
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGACGAGGAGGTGEST: gi|19270785|gb|BM887041.1|BM887041
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|8825852|gb|BE209582.1|BE209582
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGEST: gi|7028648|gb|AW458431.1|AW458431
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
EST: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAG TTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
genomic: CTTTCAAGGTTTTTGACAAAGATCAAAATGGCTACATATCAGCTAGTGAGgtatacattt ... ctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTG
tactagtggtatagtatatgatagtaaaattaatatatgtttctgctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGGAGCAGATGATTAAAGAAGCAGATTTGGATGGTGATGGCCAAGTTAACT
aattaat putative branch site (score: 3)
tttctgct putative PPT
tatagtatatgatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtatataagtgtatagagacacttacatacacatagctacctctactagtggtatagtatatgatagtaaaattaatatatgtttctgctgtgtgcagTTGAGACACGTAATGATCAATCTAGGAGAAAAACTAACCGATGAGGAGGTGGAGCAGATGATTAAAGAAGCAGATTTGGATGGTGATGGCCAAGTTAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - -catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg