1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcaagttttcttattaagttgattcttatttagattgtgttggtagttgtttatgaactgtgtgcatcttcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAACCCCACCGAAGAAGAGCTCCAAGATATGATAAGCGAAGTGGATGCAGA
species | Glycine max |
transcript | GLYMA20G35440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|192334235|gb|FK026616.1|FK026616
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|192329952|gb|FK021538.1|FK021538
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCGTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|192311224|gb|FK003737.1|FK003737
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGGTGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGGEST: gi|192311223|gb|FK003736.1|FK003736
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGGTGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGGEST: gi|15000001|gb|BI320815.1|BI320815
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|7589101|gb|AW704882.1|AW704882
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|151411418|gb|EV281229.1|EV281229
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAEST: gi|19270785|gb|BM887041.1|BM887041
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
EST: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATG GTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
genomic: GATTGTTGATTTTAAAGAGGCCTTTGGCTTGTTTGACAAAGATGGGGATGgtgagcaagt ... tcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGA
cttatttagattgtgttggtagttgtttatgaactgtgtgcatcttcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAACCCCACCGAAGAAGAGCTCCAAGATATGATAAGCGAAGTGGATGCAGA
catcttc CT-rich tract
ttcataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaagttttcttattaagttgattcttatttagattgtgttggtagttgtttatgaactgtgtgcatcttcataattagGTTGCATTACTGTGGAAGAACTTGCCACTGTTATTCGGTCGTTGGATCAGAACCCCACCGAAGAAGAGCTCCAAGATATGATAAGCGAAGTGGATGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA