Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192301125|gb|FG988950.1|FG988950EST: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAG
genomic: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
EST:
gi|192312383|gb|FK003175.1|FK003175EST: CTGTTGGTAGTAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
genomic: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
EST:
gi|193640440|gb|FK592783.1|FK592783EST: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
genomic: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
EST:
gi|192330253|gb|FK020553.1|FK020553EST: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
genomic: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
EST:
gi|192312384|gb|FK003176.1|FK003176EST: CTGTTGGTAGTAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
genomic: CTGTTGGTAGCAACGTCGAAGAGCTCGTCTACAAGAATATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
EST:
gi|208289119|gb|GE085412.1|GE085412EST: ATACGATTTGAG GTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
genomic: ATACGATTTGAGgtcccttcac ... tttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttactactgtgcaggattcaaacattactcattacattttgtcatttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATATTACCGAGGAACGCATGCTGTTATTGTGGTGATAGACAGCAGTGATAGAG
tttatttc CT-rich tract
attacattttgtcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgttttaaacaacatttggtatttggtatgaatatttcgaagctttactactgtgcaggattcaaacattactcattacattttgtcatttatttcagGTCTGGGATCTTGGTGGACAAGAAAGATTGAGGACATCATGGGCAACATATTACCGAGGAACGCATGCTGTTATTGTGGTGATAGACAGCAGTGATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT