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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAAACAAAAATTGAAAATTCCAAGTTGGGGTTCTCACGATTTCGATTCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctttgcgttcttcatgtttttttttgcacgttttatcgatctgctaacttgacatttgatccaacgcaagttcgttgcttttttgattgaaaatcagattttgagataccctttgtgttcccaattaatgggttttttctggtgattgtatgggtgttaatttagaagttgatatag

Basic information

species Glycine max
transcript GLYMA20G35430.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301125|gb|FG988950.1|FG988950
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         GATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttgatatagGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA
EST: gi|192312383|gb|FK003175.1|FK003175
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         GATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttgatatagGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA
EST: gi|192330253|gb|FK020553.1|FK020553
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGAAGTTGATATAG              
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCC------------AGgttcgatctt ...
EST: gi|192312384|gb|FK003176.1|FK003176
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         GATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttgatatagGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATTCCCTGCAAAAGA