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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAGgtacaaaacttttgtaatgtaacattaattccttctctttatcttgatacctgaagcatctaagttcttcaaatgatgatttgttggcttgtag

Basic information

species Glycine max
transcript GLYMA20G35150.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35150.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0049g01160.t01 (Vitis vinifera), 5'ss of exon 4
CCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAGgtacaa---aacttttgtaatgtaacattaattc--cttctctttatcttgatac---ctgaagcatctaagttcttcaaatgatgatttgttggcttgtag-------------------------------------
| ||| | |||||  ||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||  || || |||   ||||||||||     ||  ||||||   |||  | | |     ||  | || ||   ||     |||  ||||        |||   |     |||  | |    |                                       
CAAATGCGTTAGTGATGAATGATGATTGTCAAACTGCACTTGATGTTGCTAGAGCAAAAGGGCACAGCAGAGTGGTCCGTGTGATTGAGgtacttgttaatgtttgtagcataatgtaattctagtttacccttgtcccaatgtgcactgtggcatgattcactttctttttccattttaatcgaagatgatgactgaaaactatgttttcatttggtgcttttttag