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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcaagtgtctataatatgcaaaacgtgactatttccattcatttgaattgtagaaactccaataaatgttatttatatgggatttactgactgcagCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAG

Basic information

species Glycine max
transcript GLYMA20G35150.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35150.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g01160.t01 (Vitis vinifera), 3'ss of exon 3
gtatggtcaagtgtct----ataatatgcaaaacgtg-actatttccattca----------tttgaattgtaga-----aactccaataaatgtta-------tttatatgggatttactgactg------cagCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAG
||  | |  | ||||     || ||    ||||| || |||| | | ||| |          ||| |   ||  |     ||| |   | | || ||       || |||   | ||| ||  ||       |||| ||| | |||||  ||||||||||||||| |||||| ||||| ||||| || || ||||| |||||||  || || |||   ||||||
gtgcgttgtaatgtcatgaaatcatggataaaacttgcactactgctattgactgatttttttttcagcagtgaacgataaaccctcttcactgctacaataagttaataaatggtttgctctctaaattttcagCAAATGCGTTAGTGATGAATGATGATTGTCAAACTGCACTTGATGTTGCTAGAGCAAAAGGGCACAGCAGAGTGGTCCGTGTGATTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaattgtagaaactccaataaatgttatttatatgggatttactgactgcagCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGACACAGCAATGTTGTTCGTACAATTGAG
                                           tactgac  putative branch site (score: 1)
                tccaataaatgttatt  TA-rich tract