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...gtgtctgtacattgtgcacgacaaagtagtttattatttcaattctacaaattgtatgagaaaggatttcttcagccaaagattttcatctatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACTTGTTCTGCAAAGTGAGCATTCTAGGCATAGGTCTTCAGATGATGTGCC
species | Glycine max |
transcript | GLYMA20G35100.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAG GGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACEST: gi|15337715|gb|BI498371.1|BI498371
genomic: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAGgtttcatcct ... tatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGAC
EST: GAACGGCCTTCAG GGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACEST: gi|6454202|gb|AW184815.1|AW184815
genomic: GAACGGCCTTCAGgtttcatcct ... tatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGAC
EST: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAG GGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACEST: gi|58014782|gb|CX701524.1|CX701524
genomic: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAGgtttcatcct ... tatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGAC
EST: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAG GGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGAC
genomic: ACCAGTCATAAACCCCGGACAATCAGGAGAGAGAATAGAACGGCCTTCAGgtttcatcct ... tatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGAC
tacaaattgtatgagaaaggatttcttcagccaaagattttcatctatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACTTGTTCTGCAAAGTGAGCATTCTAGGCATAGGTCTTCAGATGATGTGCC
ttttcatct CT-rich tract
aaagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtctgtacattgtgcacgacaaagtagtttattatttcaattctacaaattgtatgagaaaggatttcttcagccaaagattttcatctatgttttagGGGGTTTCTCAGGTGCTGTTGAGGCATTTGCAAGGAGGAATGGCTCTGGACTTGTTCTGCAAAGTGAGCATTCTAGGCATAGGTCTTCAGATGATGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
gtgtctg
- - - - - - - tgcacga
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaga