1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTACATCATACTTCCACTACTGCCGAACGTTGCGGTTTGAAGATAAGCCTGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAGgttaatttcatatatataaattttaatgtttcttaatgagtagtgaaattctattaggctttgaaaatcttgcttttacag
species | Glycine max |
transcript | GLYMA20G35100.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGATTATTCTTATCTTAAGAGACTATTTCAGGACCTATTCATCCGAGAAG GTTATCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAAAEST: gi|6454202|gb|AW184815.1|AW184815
genomic: TGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAGgttaatttca ... gcttttacagGTTATCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAAA
EST: TGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAG GTTATCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAAAEST: gi|58014782|gb|CX701524.1|CX701524
genomic: TGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAGgttaatttca ... gcttttacagGTTATCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAAA
EST: TATTCATCCGAGAAG G-TATTCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAA
genomic: TATTCATCCGAGAAGgttaatttca ... gcttttacagGTTA-TCAGTTTGATTATGTATTTGATTGGACTATGCTGAAGTATCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTACATCATACTTCCACTACTGCCGAACGTTGCGGTTTGAAGATAAGCCTGATTATTCTTATCTTAAGAGACTATTTCGGGACCTATTCATCCGAGAAGgttaatttcatatatataaattttaatgtttcttaatgagtagtgaaattctattaggctttgaaaatcttgcttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA