1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgattcctctccctctccttttcactctacgctacttcttctctttaatattctcgtattctaactgcgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACA
species | Glycine max |
transcript | GLYMA20G35000.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|9987439|gb|BE661547.1|BE661547
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|23053062|gb|BU577553.1|BU577553
genomic: GCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|6719222|gb|AW306869.1|AW306869
genomic: GTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|192295813|gb|FG990865.1|FG990865
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: AAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|19268916|gb|BM885172.1|BM885172
genomic: AAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|151403484|gb|EV273294.1|EV273294
genomic: TCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|8282661|gb|BE020222.1|BE020222
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|15203974|gb|BI426751.1|BI426751
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: ACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|208074184|gb|GD871601.1|GD871601
genomic: ACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TACCGTGTTGCCTCTTCTGCAATCTACTAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|298166015|gb|HO008986.1|HO008986
genomic: TACCGTGTTGCCTC-TCTGCAATCTAC-AGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCTCCGTACCGTTTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGTCCAAATCAACTACGGCEST: gi|15664880|gb|BI702251.1|BI702251
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|17401864|gb|BM178646.1|BM178646
genomic: CAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|213598439|gb|DB958107.1|DB958107
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|24135471|gb|BU925981.1|BU925981
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|20815024|gb|BQ299502.1|BQ299502
genomic: GTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|7147469|gb|AW509391.1|AW509391
genomic: CAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|192328608|gb|FK023584.1|FK023584
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|4301072|gb|AI443138.1|AI443138
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GCCTTTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|192314611|gb|FK008469.1|FK008469
genomic: GCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|298167865|gb|HO013128.1|HO013128
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|18730104|gb|BM525684.1|BM525684
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|151397456|gb|EV267329.1|EV267329
genomic: CTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|193429306|gb|FK398048.1|FK398048
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|19269342|gb|BM885598.1|BM885598
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|254322905|gb|GR835620.1|GR835620
genomic: CCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCATGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|9439891|gb|BE440403.1|BE440403
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|5057911|gb|AI736387.1|AI736387
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|18726738|gb|BM523726.1|BM523726
genomic: CGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: AATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|31307637|gb|CD392840.1|CD392840
genomic: AATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCCAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|298167836|gb|HO013099.1|HO013099
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|213598764|gb|DB968235.1|DB968235
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|31312051|gb|CD397254.1|CD397254
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCGAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|298172301|gb|HO019341.1|HO019341
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|209719395|gb|BW674475.1|BW674475
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|8286365|gb|BE023924.1|BE023924
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|14258881|gb|BG881789.1|BG881789
genomic: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCEST: gi|193437135|gb|FK402988.1|FK402988
genomic: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCC-AAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
ttcttctctttaatattctcgtattctaactgcgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACA
ttctaac putative branch site (score: 1)
cgttttctctgtttct putative PPT
tctttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattcctctccctctccttttcactctacgctacttcttctctttaatattctcgtattctaactgcgttttctctgtttcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACA
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