Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccccaccaccacccaagttcttacctttattcacatttacgcacacccatttgcatgttttcttagaattagttcttgctttgttgataatcctaataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCTAAGAAGA

Basic information

species Glycine max
transcript GLYMA20G35000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35000.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 3'ss of exon 2
gtaactccccaccaccacccaagttcttacctttattcacatttacgcacacccatttgcatgttttcttagaattagttcttgctttgttgataatcctaataat-attagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCTAAGAAGA
           | |  |    |   ||   | || |||  ||    |   |     ||| | ||  | | |  ||| | | |  | |   |     | ||   ||| |  |||| ||||| ||||| ||||| ||||| |||| |||  |||| ||||| ||||||||||| || || || ||||||||||| ||  | ||||| |||||||
-----------ctattatgttatcgctgctcatttttctaatcggagttaattatattgta-gtgctttgattattggatatcacataactctgttttctgtgaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGGCTTTCCCTGACTGACATCAAGATTGACATCAAACGTGTCCCGAAGAAGA

upper sequence: GLYMA20G35000.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 2
gtaactccccaccaccacccaagttcttacctttattcacatttacgcacacccatttgcatgttttcttagaattagttcttgctttgttgataatcctaataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCTAAGAAGA
         ||     | |  |  |  ||| | ||   |  || |   |  |    |||  |   ||  |    ||  ||     |||||  ||  ||    |  |||||||||||||| |||||||| || |||||  | | |||| | || |||||  |||||||||| || || || ||||||||||||||  | ||||| |||||||
-------tacatgtgaatctgaaat--tacttctagctattttgagataatcgtcgttgatttgctttctgatgttgattgaaattttgt--attttctgtctggtattagGCTCTTGTTGATGCCCCCGACATGGTTCGTTGCCAAATGAACTTCAAGCGGCTTTCCCTGACTGACATCAAGATTGACATTAAACGTGTCCCAAAGAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31307637|gb|CD392840.1|CD392840
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18726738|gb|BM523726.1|BM523726
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|14258881|gb|BG881789.1|BG881789
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192328608|gb|FK023584.1|FK023584
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|8286365|gb|BE023924.1|BE023924
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192315797|gb|FK008507.1|FK008507
EST:     ATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: ATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18730104|gb|BM525684.1|BM525684
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|208074184|gb|GD871601.1|GD871601
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|24135471|gb|BU925981.1|BU925981
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151397456|gb|EV267329.1|EV267329
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|8282661|gb|BE020222.1|BE020222
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|19269342|gb|BM885598.1|BM885598
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31312051|gb|CD397254.1|CD397254
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|23053062|gb|BU577553.1|BU577553
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|213598439|gb|DB958107.1|DB958107
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|213598764|gb|DB968235.1|DB968235
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192314611|gb|FK008469.1|FK008469
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAGAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|4301072|gb|AI443138.1|AI443138
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|254322905|gb|GR835620.1|GR835620
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193479679|gb|FK448174.1|FK448174
EST:     GTCATCGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAG
genomic: GTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATG-CCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAG
EST: gi|17401864|gb|BM178646.1|BM178646
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192295813|gb|FG990865.1|FG990865
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193429306|gb|FK398048.1|FK398048
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTTATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|20815024|gb|BQ299502.1|BQ299502
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298166015|gb|HO008986.1|HO008986
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|9987439|gb|BE661547.1|BE661547
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7145961|gb|AW507883.1|AW507883
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGAGAGGACCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298167865|gb|HO013128.1|HO013128
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCATGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|4292070|gb|AI441852.1|AI441852
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298172301|gb|HO019341.1|HO019341
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7147469|gb|AW509391.1|AW509391
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|15664880|gb|BI702251.1|BI702251
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151403484|gb|EV273294.1|EV273294
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|6719222|gb|AW306869.1|AW306869
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192314610|gb|FK008468.1|FK008468
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAGAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298167836|gb|HO013099.1|HO013099
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31460005|gb|CD402033.1|CD402033
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGATCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|15203974|gb|BI426751.1|BI426751
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|5057911|gb|AI736387.1|AI736387
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|19268916|gb|BM885172.1|BM885172
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|209719395|gb|BW674475.1|BW674475
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCAATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|6072241|gb|AW101628.1|AW101628
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAA
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAA
EST: gi|9439891|gb|BE440403.1|BE440403
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193437135|gb|FK402988.1|FK402988
EST:     AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTTATTGACCAGAACAGA                         GCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactcccc ... ataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgttttcttagaattagttcttgctttgttgataatcctaataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCTAAGAAGA
                                        tcctaat  putative branch site (score: 2)
                                 ttgataatcctaataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactccccaccaccacccaagttcttacctttattcacatttacgcacacccatttgcatgttttcttagaattagttcttgctttgttgataatcctaataatattagGCTCTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCTAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG