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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTAGTGTTCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctctccctctccttttcactctacgctacttcttctctttaatattctcgtattctaactgcgttttctctgtttcttgttcag

Basic information

species Glycine max
transcript GLYMA20G35000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31307637|gb|CD392840.1|CD392840
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCCAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|18726738|gb|BM523726.1|BM523726
EST:     AATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: AATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|14258881|gb|BG881789.1|BG881789
EST:     CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|192328608|gb|FK023584.1|FK023584
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|8286365|gb|BE023924.1|BE023924
EST:     CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|18730104|gb|BM525684.1|BM525684
EST:     CTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|208074184|gb|GD871601.1|GD871601
EST:     TACCGTGTTGCCTCTTCTGCAATCTACTAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TACCGTGTTGCCTC-TCTGCAATCTAC-AGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|24135471|gb|BU925981.1|BU925981
EST:     GTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|151397456|gb|EV267329.1|EV267329
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|8282661|gb|BE020222.1|BE020222
EST:     GTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|19269342|gb|BM885598.1|BM885598
EST:     CCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|31312051|gb|CD397254.1|CD397254
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCGAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|23053062|gb|BU577553.1|BU577553
EST:     GTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|213598439|gb|DB958107.1|DB958107
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|213598764|gb|DB968235.1|DB968235
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|192314611|gb|FK008469.1|FK008469
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|4301072|gb|AI443138.1|AI443138
EST:     GCCTTTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|254322905|gb|GR835620.1|GR835620
EST:     GTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCATGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|17401864|gb|BM178646.1|BM178646
EST:     GTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|192295813|gb|FG990865.1|FG990865
EST:     AAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: AAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|193429306|gb|FK398048.1|FK398048
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|20815024|gb|BQ299502.1|BQ299502
EST:     CAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|298166015|gb|HO008986.1|HO008986
EST:     TCCTCAAGCCTCCGTACCGTTTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGTCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|9987439|gb|BE661547.1|BE661547
EST:     GCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|298167865|gb|HO013128.1|HO013128
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|298172301|gb|HO019341.1|HO019341
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|7147469|gb|AW509391.1|AW509391
EST:     GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|15664880|gb|BI702251.1|BI702251
EST:     CAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|151403484|gb|EV273294.1|EV273294
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|6719222|gb|AW306869.1|AW306869
EST:     GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|192314610|gb|FK008468.1|FK008468
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|298167836|gb|HO013099.1|HO013099
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|15203974|gb|BI426751.1|BI426751
EST:     ACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: ACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|5057911|gb|AI736387.1|AI736387
EST:     CGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: CGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|19268916|gb|BM885172.1|BM885172
EST:     TCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|209719395|gb|BW674475.1|BW674475
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|9439891|gb|BE440403.1|BE440403
EST:     GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
genomic: GCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC
EST: gi|193437135|gb|FK402988.1|FK402988
EST:     TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATG                         CCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCC-AAATCAACTACGGC
genomic: TCCTCAAGCCACCGTACCGTGTTGCCTCTCTGCAATCTACAGCCAAAATGgtgattcctc ... tcttgttcagCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGC