Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37995282|gb|CF806871.1|CF806871EST: ACGAGTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: ACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST:
gi|254327020|gb|GR836629.1|GR836629EST: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST:
gi|37995159|gb|CF806748.1|CF806748EST: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST:
gi|37997055|gb|CF808644.1|CF808644EST: TAAGCTAAAGATGTCTGACGATTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: TAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST:
gi|254334428|gb|GR844213.1|GR844213EST: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST:
gi|6964469|gb|AW433162.1|AW433162EST: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCCCCCCAAACAGATTGAGTTGCATTTATAAAAAAAAAAAAAAGTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaactatgttcaaatatataagatttgtatatgaacatagttttaatgaattagtaacagtcataaattgcaatgaataatgtcttgtaactaataattcgagggtttggcttgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG