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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaactatgttcaaatatataagatttgtatatgaacatagttttaatgaattagtaacagtcataaattgcaatgaataatgtcttgtaactaataattcgagggtttggcttgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGGCTACAATTGAGAGAGAGAATCCTTTGGTGAATGCTATCATTGTGCCTGA

Basic information

species Glycine max
transcript GLYMA20G34810.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995282|gb|CF806871.1|CF806871
EST:     ACGAGTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: ACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST: gi|254327020|gb|GR836629.1|GR836629
EST:     GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST: gi|37995159|gb|CF806748.1|CF806748
EST:     GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST: gi|37997055|gb|CF808644.1|CF808644
EST:     TAAGCTAAAGATGTCTGACGATTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: TAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST: gi|254334428|gb|GR844213.1|GR844213
EST:     GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
EST: gi|6964469|gb|AW433162.1|AW433162
EST:     GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAG                         GTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG
genomic: GTCAAACAGAGAATTAGGCAATAAGCTAAAGATGTCTGACGATTGCAAAGgtaacaacta ... tgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaatgaataatgtcttgtaactaataattcgagggtttggcttgttgtgcagGTAAGAGCTCATGGCCTGAGCTTGTTGGAGTGCAAGGGACAGTGGCAGAGGCTACAATTGAGAGAGAGAATCCTTTGGTGAATGCTATCATTGTGCCTGA
                     aactaat  putative branch site (score: 2)
                 ttgtaactaataatt  TA-rich tract