1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaattccccaagatgagacttacaatgtccaaccactatccacttttgtaaggagtagtgatgtttgtgatatactgatattgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTAGCTTGGGAAG
species | Glycine max |
transcript | GLYMA20G34790.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTATTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCCGAAAAG GTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGAEST: gi|21677435|gb|BQ629786.1|BQ629786
genomic: GGAGTTATTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCCGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGA
EST: GGAGTTATTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCCGAAAAG GTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGA
genomic: GGAGTTATTGGTGTTTTAGGTGCTATTGAAGCCATCAGAGTCCCGAAAAGgtttttgatt ... accttcacagGTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGA
ttgtaaggagtagtgatgtttgtgatatactgatattgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTAGCTTGGGAAG
ccttcac CT-rich tract
atattgattgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattccccaagatgagacttacaatgtccaaccactatccacttttgtaaggagtagtgatgtttgtgatatactgatattgattgaaaaccttcacagGTCTGGTTTTAAACCTAGAAGATCATTGGAAGTCATATTATTCACATCAGAAGAACCAACACGCTTTGGAATAGGTAGCTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -ttcccca
- - - - - - - - - - - - - - ccaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt