1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaagctcatgttaacatcataacctttcctatctttattgcaatatgcccgtaatttactaactacactcaccactttatctttgcttgatttatgcagGGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGATGCTATACCTTACTCTGGAAAATATGATGGAGTTATTGGTGTTTTAGGT
species | Glycine max |
transcript | GLYMA20G34790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG GGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGAEST: gi|6566210|gb|AW233891.1|AW233891
genomic: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagtgtct ... atttatgcagGGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGA
EST: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG GGATGGCGTTGAACTTGA-CTTGEST: gi|21677435|gb|BQ629786.1|BQ629786
genomic: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagtgtct ... atttatgcagGGATGGCGTTGAACCTGAGCTTG
EST: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG GGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGA
genomic: GCTGGTCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTGgtgagtgtct ... atttatgcagGGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGA
atgcccgtaatttactaactacactcaccactttatctttgcttgatttatgcagGGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGATGCTATACCTTACTCTGGAAAATATGATGGAGTTATTGGTGTTTTAGGT
taatttactaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagctcatgttaacatcataacctttcctatctttattgcaatatgcccgtaatttactaactacactcaccactttatctttgcttgatttatgcagGGATGGCGTTGAACCTGAGCTTGCTGCAGTTGCAACAGGTTCGCACATTGATGCTATACCTTACTCTGGAAAATATGATGGAGTTATTGGTGTTTTAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - tcatgtt
- - - - - - - - - - - -cctttcc
- - - - - - - - - - - - - - - - - - tattgca
- - - - - - - - - - - - - - - - - - - - - - tatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcac